Capturing model metrics¶
omega-ml provides experiment and model tracking for all models using its built-in metrics store.
Running an experiment¶
Collecting metrics as part of an experiment is straight forward:
lr = LogisticRegression()
X, Y = ...
with om.runtime.experiment('myexp') as exp:
lr.fit(X, Y)
score = lr.score(X, Y)
exp.log_metric('accuracy', score)
exp.log_param('penalty', 'L2')
exp.log_artifact(lr, 'mymodel')
We can get back the data collected in an experiment using exp.data(),
as a DataFrame:
In [1]: exp.data()
Out[2]:
experiment run event dt node step key value
0 myexp 1 start 2021-11-22T15:49:51.893920 eowyn NaN NaN NaN
1 myexp 1 system 2021-11-22T15:49:51.927902 eowyn NaN system {'platform': {'system': 'Linux', 'node': 'eowy...
2 myexp 1 metric 2021-11-22T15:49:51.938601 eowyn NaN accuracy 1
3 myexp 1 param 2021-11-22T15:49:51.950340 eowyn NaN penaltiy L2
4 myexp 1 artifact 2021-11-22T15:49:51.984030 eowyn NaN mymodel {'name': 'mymodel', 'data': 'experiments/.arte...
5 myexp 1 stop 2021-11-22T15:49:51.994113 eowyn NaN NaN NaN
Note the run column records the number of times the above with
block has been run. If you run it again, there is a second set of metrics. We can
get back all the runs by filtering as exp.data(run='all'), or a specific set
of runs by giving a list or a tuple exp.data(run=(1,3)). Additional
filters are available for the event, node, step, key fields
In [3]: exp.data(run='all', key='accuracy')
Out[4]:
experiment run step event key value dt node
0 myexp 1 None metric accuracy 1 2021-11-22T15:49:51.938601 eowyn
1 myexp 2 None metric accuracy 1 2021-11-22T16:02:08.579077 eowyn
2 myexp 3 None metric accuracy 1 2021-11-22T16:02:13.048647 eowyn
Tracking experiments with multiple steps¶
To run an experiment that uses a series of parameters or a k-fold of input data
such as in cross-validation, we can track each step separately. In this case there
the data will be recorded for one run (e.g. run=1) and many steps.
shuffle = ShuffleSplit(n_splits=5)
with om.runtime.experiment('myexp') as exp:
for step, split in enumerate(shuffle.split(X))
Xs, Ys = X[split[0]], Y[split[1]]
lr.fit(Xs, Ys)
score = lr.score(X, Y, step=step)
exp.log_metric('accuracy', score, step=step)
exp.log_param('penalty', 'L2', step=step)
exp.log_artifact(lr, 'mymodel', step=step)
If the ML framework provides model callbacks, such as Tensorflow, the model can
be fit using exp.tensorflow_callback(). In this case, the model itself
will provide model metrics via the callback:
model = Sequential()
...
model.compile(metrics=['accuracy'])
with om.runtime.experiment('myexp') as exp:
model.fit(X, Y,
callbacks=[exp.tensorflow_callback()])
Customizing tracking behavior¶
Tracking behavior can be adjusted by using a different tracking provider,
e.g. the SimpleTrackingProvider logs model metrics, while the
OmegaProfilingTracker also logs system resource usage like
CPU and RAM while running the experiment. Write your own tracking providers
to forward metrics to a third-party metrics store, or to provide custom
callbacks to your machine learning framework.
The specific tracking provider used is specified as the provider=
argument when creating the experiment. For example, the ‘profiling’ provider
will track system metrics during execution:
In [1]: with om.runtime.experiment('myexp2',
provider='profiling') as exp:
...
Out[2]: exp.data()
experiment run event dt node step key value
0 myexp2 1 start 2021-11-22T16:53:28.534211 eowyn NaN NaN NaN
1 myexp2 1 system 2021-11-22T16:53:28.579121 eowyn NaN system {'platform': {'system': 'Linux', 'node': 'eowy...
2 myexp2 1 metric 2021-11-22T16:53:28.592081 eowyn NaN accuracy 1
3 myexp2 1 param 2021-11-22T16:53:28.600690 eowyn NaN penaltiy L2
4 myexp2 1 artifact 2021-11-22T16:53:28.627970 eowyn NaN mymodel {'name': 'mymodel', 'data': 'experiments/.arte...
5 myexp2 1 profile 2021-11-22T16:53:28.635717 eowyn 0.0 profile_dt 2021-11-22T16:53:28.531654
6 myexp2 1 profile 2021-11-22T16:53:28.643665 eowyn 0.0 memory_load 22.4
7 myexp2 1 profile 2021-11-22T16:53:28.651388 eowyn 0.0 memory_total 33542479872
8 myexp2 1 profile 2021-11-22T16:53:28.658964 eowyn 0.0 cpu_load [25.9, 27.1, 27.6, 28.6]
9 myexp2 1 profile 2021-11-22T16:53:28.666597 eowyn 0.0 cpu_count 4
10 myexp2 1 profile 2021-11-22T16:53:28.673986 eowyn 0.0 cpu_freq [0.833, 1.728, 2.228, 1.736]
11 myexp2 1 profile 2021-11-22T16:53:28.681591 eowyn 0.0 cpu_avg [0.215, 0.6825, 0.6925]
12 myexp2 1 profile 2021-11-22T16:53:28.688981 eowyn 0.0 disk_use 95.6
13 myexp2 1 profile 2021-11-22T16:53:28.697768 eowyn 0.0 disk_total 502468108288
14 myexp2 1 stop 2021-11-22T16:53:28.705661 eowyn NaN NaN NaN
The following tracking providers are available:
default- the default tracker,OmegaSimpleTrackerprofiling- the profiling tracker,OmegaProfilingTrackernotrack- the no-operation tracker,NoTrackTracker. Use this to disable tracking.